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If students were required to self isolate due to contact with the Omicron variant, you should use the X09 code to record this.
The Y code - Asymptomatic testing programme
Secondary schools used the Y code for secondary pupils not expected to be attending school for lessons during the first week of term due to testing.
The C code - Authorised non-attendance
We expect schools not to use the C code for Covid-related absence, but discuss with the DfE if unsure.